PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G302400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-X1
Protein Properties Length: 951aa    MW: 103574 Da    PI: 8.1754
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G302400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.32.2e-05330348119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H Cqk CH GpC pC+
  Aqcoe1G302400.1.p 330 CGRHYCQKMCHMGPCEPCR 348
                        ******************6 PP

2zf-NF-X121.93.9e-07452469118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C++lCH G+CppC
  Aqcoe1G302400.1.p 452 CGIHHCNELCHAGDCPPC 469
                        ****************** PP

3zf-NF-X119.52.1e-06546564119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG+H+C++lCH G CppC 
  Aqcoe1G302400.1.p 546 CGQHSCESLCHIGHCPPCL 564
                        ******************6 PP

4zf-NF-X116.81.5e-05656672117
           zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                        CG+H C ++CH+ pC+p
  Aqcoe1G302400.1.p 656 CGMHACARTCHPFPCDP 672
                        ***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.06E-6147219No hitNo description
PROSITE profilePS500168.671155218IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.214158216IPR001841Zinc finger, RING-type
PROSITE patternPS013590158215IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023275293IPR000967Zinc finger, NF-X1-type
PfamPF014227277292IPR000967Zinc finger, NF-X1-type
CDDcd060081.86E-9320368No hitNo description
SMARTSM004380.0011330349IPR000967Zinc finger, NF-X1-type
PfamPF014222.3E-5330348IPR000967Zinc finger, NF-X1-type
CDDcd060085.50E-7384426No hitNo description
SMARTSM004380.021394413IPR000967Zinc finger, NF-X1-type
PfamPF014220.27394411IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-7442475No hitNo description
SMARTSM004381.9E-5452471IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-5452469IPR000967Zinc finger, NF-X1-type
PfamPF0142215508519IPR000967Zinc finger, NF-X1-type
CDDcd060081.94E-7536580No hitNo description
SMARTSM004383.0E-4546565IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-4546563IPR000967Zinc finger, NF-X1-type
CDDcd060083.70E-5593641No hitNo description
SMARTSM004380.034603621IPR000967Zinc finger, NF-X1-type
PfamPF014223.9603620IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7E-4656688IPR000967Zinc finger, NF-X1-type
PfamPF014220.003656672IPR000967Zinc finger, NF-X1-type
PfamPF0142272690712IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15697718IPR000967Zinc finger, NF-X1-type
PfamPF014246.3E-6829894IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MSVEHNNNNN SNNTTTTSSS NNNNNSRRRD AGSRNNNSQR KEWIPKGFPS TITPSSSTTL  60
VLNPNPNPNP NLTATSSKTS NFNGASVSSE VLSSTTPSLV TASLIDQTNR NIGKFDRNKK  120
YGDTRVRGEV RGRGVDFSSV PQLVQELKDK LIKGNVECMI CYDMVRRTAP IWSCSSCFSI  180
FHLNCIKKWA RAPTSVDLST TEKNNQGINW RCPGCQSVQL SSAKDIRYIC FCGKRPDPPF  240
DLYLTPHSCG EACGKPLDRV ISRSSGDCDD DDVRCPHVCV LQCHPGPCPP CKAFAPPRLC  300
PCGKKTITTR CFDNKSALTC GDKCNKILEC GRHYCQKMCH MGPCEPCRVP IDAVCFCEKE  360
SQLVFCGEIT VKGEMKLSDG VFSCSSVCGG RLNCGNHVCG QICHPGHCGD CELMPARIKT  420
CCCGKTMLQK ERASCLDPIP TCPQICGKLL PCGIHHCNEL CHAGDCPPCM IVVSQSCRCG  480
SSSRSVECSR KMDEKFVCEK ACGRKKNCGR HRCSERCCPL STSKSQLLGG WDPHLCSMIC  540
GKNLRCGQHS CESLCHIGHC PPCLETIFTD LTCACGKTSF PPPLPCGTPP PSCENPCLVP  600
QPCGHSSAHS CHFGDCPPCS VPVAKECIGG HVSLRNVPCG SKDIRCNQLC GKTRICGMHA  660
CARTCHPFPC DPSSVSGTSS GSKSSCRQTC GAPRTDCRHT CTAVCHPLAL CPDARCEFPV  720
TITCSCGRIT ATVPCDAGGI SGGFHVDSIF EVSVVQKLPV PLQPVEENGK KVPLGQRKLV  780
CDEECAKMER KRVLADAFDI STLNLDVLHF GENSIVSDLL VDLYRRDPKW VLSIEERFKY  840
LVSGKNKGGT ANGLRVHVFC PMLKEKRDAI RHIAERWKLS VHAAGWEPKR FLVVHVTPKS  900
KVPSRMLGPK GSLPMNVSHP LVFDPLVDMD PRLVVSLLDL PVILSEQQLH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663894.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1